https://www.jiomics.com/index.php/jiomics/issue/feed Journal of Integrated OMICS 2021-07-31T00:00:00+00:00 Jose Luis Capelo Martínez jlcapelom@proteomass.org Open Journal Systems <div class="mainrow"> <div class="homeImageMini">JIOMICS provides a forum for the publication of original research papers, letters to the editor, short communications, and critical reviews in all branches of pure and applied –omics subjects, such as proteomics, metabolomics, metallomics and genomics. Especial interest is given to papers where more than one –omics subject is covered. Papers are evaluated based on scientific novelty and demonstrated scientific applicability. Original research papers on fundamental studies, and novel sensor and instrumentation development, are especially encouraged. Novel or improved findings in areas such as clinical, medicinal, biological, environmental and materials –omics are welcome.</div> <div class="homeImageMini"> <div class="homeImageMini"> </div> <div class="homeDescription"> <table style="height: 144px; width: 100%; border-collapse: collapse;" border="0"> <tbody> <tr style="height: 18px;"> <td style="width: 50%; height: 18px;"><a href="https://www.jiomics.com/index.php/jiomics/issue/current">Current Issue</a></td> <td style="width: 50%; height: 18px; text-align: right;"><a href="https://www.jiomics.com/index.php/jiomics/issue/archive">Previous issues</a></td> </tr> <tr style="height: 18px;"> <td style="width: 50%; height: 18px;"><a href="https://www.jiomics.com/index.php/jiomics/issue/archive">Accepted manuscripts</a></td> <td style="width: 50%; height: 18px; text-align: right;"><a href="https://www.jiomics.com/index.php/jiomics/about">Editorial Board</a></td> </tr> <tr style="height: 18px;"> <td style="width: 50%; height: 18px;"><a href="https://www.jiomics.com/index.php/jiomics/about/submissions#onlinesubmissions">Guide for authors</a></td> <td style="width: 50%; height: 18px; text-align: right;"><a href="https://www.jiomics.com/index.php/jiomics/about/submissions#templateforonlinesubmissions">Template for submissions</a></td> </tr> <tr style="height: 18px;"> <td style="width: 50%; height: 18px;"><a href="https://www.jiomics.com/index.php/jiomics/about/submissions#templateforonlinesubmissions">JIOMICS references format</a></td> <td style="width: 50%; height: 18px; text-align: right;"><a href="https://www.jiomics.com/index.php/jiomics/about/submissions#authorfees">Fees</a></td> </tr> </tbody> </table> </div> </div> </div> https://www.jiomics.com/index.php/jiomics/article/view/201 Vol. 11, No. 1 (2021) 2021-07-30T14:01:44+00:00 J. L. Capelo g.pinto@bioscopegroup.org <p><a id="cell-26-identification-edit-button-61040610a6789" class="pkp_controllers_linkAction pkp_linkaction_edit pkp_linkaction_icon_" title="Edit" href="https://www.jiomics.com/index.php/jiomics/$$$call$$$/grid/issues/future-issue-grid/edit-issue?issueId=26">Vol. 11, No. 1 (2021)</a></p> 2021-07-31T00:00:00+00:00 Copyright (c) 2021 Journal of Integrated OMICS https://www.jiomics.com/index.php/jiomics/article/view/199 SPECIAL ISSUE: SELECTED ABSTRACTS OF THE V INTERNATIONAL CAPARICA CONFERENCE ON ULTRASONIC-BASED APPLICATION FROM ANALYSIS TO SYNTHESIS (ULTRASONICS 2021) 2021-07-30T13:04:30+00:00 J. L. Capelo g.pinto@bioscopegroup.org <p>SPECIAL ISSUE: SELECTED ABSTRACTS OF THE V INTERNATIONAL CAPARICA CONFERENCE ON ULTRASONIC-BASED APPLICATION FROM ANALYSIS TO SYNTHESIS (ULTRASONICS 2021)</p> 2021-07-31T00:00:00+00:00 Copyright (c) 2021 Journal of Integrated OMICS https://www.jiomics.com/index.php/jiomics/article/view/200 SPECIAL ISSUE: SELECTED ABSTRACTS OF THE IV INTERNATIONAL CAPARICA CONFERENCE IN ANTIBIOTIC RESISTANCE (IC2AR 2021) 2021-07-30T13:06:28+00:00 J. L. Capelo g.pinto@bioscopegroup.org <p>SPECIAL ISSUE: SELECTED ABSTRACTS OF THE IV INTERNATIONAL CAPARICA CONFERENCE IN ANTIBIOTIC RESISTANCE (IC2AR 2021)</p> 2021-07-30T00:00:00+00:00 Copyright (c) 2021 Journal of Integrated OMICS https://www.jiomics.com/index.php/jiomics/article/view/197 Combining detection and reconstruction of correlational and periodic motifs in viral genomic sequences with transitional genome mapping: Application to COVID-19 2021-05-03T10:42:16+00:00 Vladimir Chechetkin vladimir_chechet@mail.ru Vasily Lobzin vasili.lobzin@sydney.edu.au <p>A method of Transitional Automorphic Mapping of the Genome on Itself (TAMGI) is aimed at combining detection and reconstruction of correlational and quasi-periodic motifs in the viral genomic RNA/DNA sequences. The motifs reconstructed by TAMGI are robust with respect to indels and point mutations and can be tried as putative therapeutic targets. We developed and tested the relevant theory and statistical criteria for TAMGI applications. The applications of TAMGI are illustrated by the study of motifs in the genomes of the severe acute respiratory syndrome coronaviruses SARS-CoV and SARS-CoV-2 (the latter coronavirus SARS-CoV-2 being responsible for the COVID-19 pandemic) packaged within filament-like helical capsid. Such ribonucleocapsid is transported into spherical membrane envelope with incorporated spike glycoproteins. Two other examples concern the genomes of viruses with icosahedral capsids, satellite tobacco mosaic virus (STMV) and bacteriophage PHIX174. A part of the quasi-periodic motifs in these viral genomes was evolved due to weakly specific cooperative interaction between genomic ssRNA/ssDNA and nucleocapsid proteins. The symmetry of the capsids leads to the natural selection of specific quasi-periodic motifs in the related genomic sequences. Generally, TAMGI provides a convenient tool for the study of numerous molecular mechanisms with participation of both quasi-periodic motifs and complete repeats, the genome organization, contextual analysis of <em>cis</em>/<em>trans</em> regulatory elements, data mining, and correlations in the genomic sequences.</p> 2021-07-31T00:00:00+00:00 Copyright (c) 2021 Journal of Integrated OMICS